scButterfly.butterfly.Butterfly.augmentation

Butterfly.augmentation(aug_type=None, MultiVI_path=None)

Data augmentation for Butterfly model.

Parameters:

• aug_type (str) – Butterfly support two types of aug_type, “cell_type_augmentation”(scButterfly-T), “type_cluster_augmentation”(scButterfly-TC) and “MultiVI_augmentation”(scButterfly-C). “cell_type_augmentation” and “type_cluster_augmentation” need “cell_type” in RNA_data.obs and ATAC_data.obs， default None.

• MultiVI_path (str) – path for pretrained MultiVI model, if None, Butterfly will train a MultiVI model first, default None.